Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858273.1_cds_XP_016513823.1_26329
CDS Infomation

[gene=LOC107830702] [db_xref=GeneID:107830702] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016513823.1] [location=join(139943..140242,140741..140869,141074..141241,142154..142195,142289..142496,143027..143108,143250..143358,143818..144222)] [gbkey=CDS]
Sequence

ATGAAGAAGAATTATAAACACTCTCCTCTCATCTTTCTTCTCGTTCTTTTACTTATTTTC
TTCACTGCATTTTCAATGGTATCAGTTGAGGCTAGGAAACACCATACAAAGAAGAGCAAA
ATACACCACAAACATAGGAATAGGAATAATAAGCAGAAAAATGGAGGTGGAAATAAAGCA
CCAGATTGTTCAGACTCTCCTTCTCCAGCTCCTTCTCATGGTTTTTACCCTACACAGTTT
CCCATTTTTGACATCTTGTCCTTTGGAGCCAAAGGTGATGGAGTTTCTGATGATTCCAAG
GCACTTGAAGGAGCATGGGAAGCTGCTTGCAAAGTCCAAGGGGCTACTCTACACATTCCT
TCAGAATTCCAATTCTTAATCAATCCCATTACACTTCAAGGACCATGCATGCCTAACTTT
ATTTTTCAGGTAGATGGAACTCTCTTGGCTCCTTCAAAAGTAGGAACCTGGCCCAAATCC
AGCTTGTTCCAATGGTTAAATTTCAAGTGGATGCACAATTTTACCATCCAAGGAACTGGC
ACTTTTGATGGCCAAGGCTATAACTGGTGGAAACTTTCTCAAATTGATTATTTCCAGGAA
ATGAAGACATCTAAAAGCATTCCTGATATAAAACCGACAGTTTTACGATTTTATGCTAGC
TATAATGTGACAGTTCGTGATATCAAGATTATGAATAGTCCTCAATGTCACCTAAAATTT
GACAACTCTAAAGGAGTAAAAATCAATAACGTTACAATCTCTGCACCAGGAAGTAGCCCA
AACACTGATGGTATTCACCTTCAAAATTCTCAAGATGTTGAGATCCATCATTCCAATATA
GGAACAGGAGATGATTGCGTGTCAATTCAAACTGGTTGCTCTAATATTCATGTACATCAC
ATAAATTGTGGTCCTGGACATGGGATAAGCCTCGGAGGACTAGGTAAAGATAAAAGCGTT
GCATGCGTTTCAGACATCATTGTTGAGAACGTGAACTTGGAAAGCACTATGTATGGTGCA
AGGATAAAGACATGGCAGGGTGGTCTTGGATCCGTCAAGAACATATCATTTTCGAACATT
CAAGTATCAGATGTTAAGGTTCCAATCATGATTGATCAATATTACTGCGACAAGCATGTG
TGCAAGAATCAAACAGGAGCTGTAGCAATATCCAACGTTAAATTCAATCAGATAACAGGA
ACTTACTCTGCCAAACCAATTCATCTAGCTTGCAGTAACTCAATTCTATGCACTGACGTT
GATCTAATTGACATTCAATTAAAACCATCGTTTAATTATCGGGGAATTCAGCAGGGATTG
TGCTGGAATTCTTATGGAAAATCACAAGCACCACTTCTTCCTTCAAGTATGGATTATTGT
GTAAGAAGGGGAAGTGGCTTTGTTAGAAGAATATCAAGATCCCATGAAAATGTCTGCTCG
TAA

Peptide Sequence

PEP ID

XP_016513823.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MKKNYKHSPLIFLLVLLLIFFTAFSMVSVEARKHHTKKSKIHHKHRNRNNKQKNGGGNKA
PDCSDSPSPAPSHGFYPTQFPIFDILSFGAKGDGVSDDSKALEGAWEAACKVQGATLHIP
SEFQFLINPITLQGPCMPNFIFQVDGTLLAPSKVGTWPKSSLFQWLNFKWMHNFTIQGTG
TFDGQGYNWWKLSQIDYFQEMKTSKSIPDIKPTVLRFYASYNVTVRDIKIMNSPQCHLKF
DNSKGVKINNVTISAPGSSPNTDGIHLQNSQDVEIHHSNIGTGDDCVSIQTGCSNIHVHH
INCGPGHGISLGGLGKDKSVACVSDIIVENVNLESTMYGARIKTWQGGLGSVKNISFSNI
QVSDVKVPIMIDQYYCDKHVCKNQTGAVAISNVKFNQITGTYSAKPIHLACSNSILCTDV
DLIDIQLKPSFNYRGIQQGLCWNSYGKSQAPLLPSSMDYCVRRGSGFVRRISRSHENVCS

Transcript Sequence

Gene sequence data has not been registered.